PhD Opportunity – Are fungicide residues in compost increasing AMR in environmental, opportunistic fungi?

🎓 CENTA / NERC DTP PhD Studentship, The Open University

THE CENTRAL ENGLAND NERC TRAINING ALLIANCE (CENTA)​


🔬 Research Focus

  • Study how azole‑based fungicides (widely used in agriculture) may drive antifungal resistance in environmental fungi like Aspergillus fumigatus.
  • Identify the minimal selective concentration (MSC): the lowest fungicide concentration in compost that enriches resistant fungal strains.
  • Investigate bioavailability of fungicides during different stages of compost decay — because how much is “free” vs bound affects selection pressure.
  • Define environmental “hotspots”: places (e.g., composting sites) where resistance emergence is most likely.
  • Translate the findings into sustainable practices for composting and agriculture to limit selection for resistance, protecting both environmental and human health.

🏛️ Partners & Impact

  • Host Institution: UK Centre for Ecology & Hydrology (UKCEH)
  • Supervisors:
    • Isobel Stanton, UKCEH
    • Andrew Singer (UKCEH)
    • Ian Martin (Environment Agency)
    • Matthew Fisher (Imperial College London)
  • Policy & Regulatory Relevance: Environment Agency is co‑supervisor, enabling translation of insights into guidance or regulation.

🧪 Methods & Training

  • Lab-based experiments: competition assays between resistant and susceptible strains.
  • Use of liquid media and artificial compost to simulate selection under different bioavailability conditions.
  • Work with both single fungal strains and mixed environmental communities.
  • Techniques: classical microbiology (culturing), molecular biology (PCR, sequencing), bioinformatics, and statistical analysis.
  • Training via CENTA Training Credits (CTCs) for professional development.

🎯 Why This PhD Matters

  • Fills a crucial gap: fungal AMR is under-studied compared to bacterial resistance. Environmental fungicide use might be a major driver.
  • Direct human health relevance: A. fumigatus from compost can infect immunocompromised people, and resistance could undermine treatment.
  • Supports environmental sustainability by guiding better composting practices and fungicide use to reduce AMR risk.
  • Embedded in CENTA, giving access to strong training, cross-institutional collaboration, and a multidisciplinary network.

For more information and to apply, please visit: 2026-UKCEH03 Are fungicide residues in compost increasing AMR in environmental, opportunistic fungi? – CENTA

 Applications must be submitted by 23:59 GMT on Wednesday 7th January 2026.  

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